Applies the Alignment Parameters (shift and rotation) that have been applied to one stack on a stack of the same size. This is useful, when the alignment was run on a somewhat modified version (high dose, downsampled images etc.) of the original stack.
Needed is a stack of particles mostly without applied alignment and a stack of particles containing the alignment parameters. The shift and rotation parameters of the second stack are than unchanged or scaled transferred on the first stack.
Parameter and I/Os
| Parameters | Description |
| With ccc |  |
| Revert | Apply the invert of the alignment parameters given. This is useful when an alignment should be reverted |
| Apply rotations | Whether or not to apply the rotational parameter |
| Apply shifts | Whether or not to apply shift parameter |
| Scale factor (shifts) | If the images are scaled differently the shiftparameter can be scaled by this value |
| Input | Description |
| Input | Stack of images on which the images on which the parameter should be applied |
| Input Parameter | Stack of images containing the alignment parameter |
| Output | Description |
| Output | Input images with applied parameter |
| New/Changed Header Values | Description |
| appliedAlphaAngle | which inplane rotation has been applied to this image |
| appliedXshift | which X shift has been applied to this image |
| appliedXshift | which X shift has been applied to this image |