Reconstruction

THIS position should be used for a brief introduction (max 2 sentences!) of the logic, stating WHAT and WHY it is doing something.

Here, a general/generic description of HOW the logic is USED should be given. Try to be as general as possible, but also mention prerequisites, restrictions, advantages, requirements which are specific of this logic. Basically everything the user needs to know to successfully use this logic.

This mode makes reconstruction in Fourier space and is generally faster than Real space reconstruction

Parameters	Description
Pixel in Angstrom	Pixel size of the microscope
With gridding	Use gridding reconstruction algorithm
Normalize 3D	Normalizes the obtained 3D structure (mean=0)
→ 3D normalization sigma	Sigma value for normalization
Padding factor
Already phase flipped	Indicate whether phase flipping was applied on the previous steps
Reproject 3D	Gives additional output of 2D reprojections of the obtained 3D structure
Symmetry	Symmetry of the complex studied (if known)
With CTF	Indicate whether header files with CTF are available

This mode makes reconstruction in Real space

In this paragraph, the “HOW a logic works under the hood” and WHY someone should use it can be elaborated with higher detail. Describes a scenario in an image processing workflow where this logic can be used to solve the resulting problem. Also, wikipages, publications or anything else describing the theory behind an algorithm should be linked here, if applicable.