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Reconstruction
THIS position should be used for a brief introduction (max 2 sentences!) of the logic, stating WHAT and WHY it is doing something.
Usage
Here, a general/generic description of HOW the logic is USED should be given. Try to be as general as possible, but also mention prerequisites, restrictions, advantages, requirements which are specific of this logic. Basically everything the user needs to know to successfully use this logic.
Modes
Fourier
Here, a short introduction for the given mode should be placed. Again, state WHAT and WHY this mode us useful in not more than 2 sentences.
| Parameters | Description |
|---|---|
| Pixel in Angstrom | Description of this parameter |
| With gridding | more description |
| Normalize 3D | and more more more |
| Padding factor | … descriptions |
| Already phase flipped | and more more more |
| Reproject 3D | … descriptions |
| Symmetry | … descriptions |
| With CTF | and more more more |
| Input | Description |
|---|---|
| Input | Class averages with assigned angular info or alisums |
| Pre 3D info | Input Description 2 |
| Output | Description |
|---|---|
| 3D | 3D structure reconstructed from projections |
| Reprojections (if Reproject 3D parameter is enabled) | 2D projections obtained from 3D structure |
Real Space
Here, a short introduction for the given mode should be placed. Again, state WHAT and WHY this mode us useful in not more than 2 sentences.
| Parameters | Description |
|---|---|
| Normalize 3D | Normalizes the obtained 3D structure (mean=0) |
| → 3D normalization sigma | Sigma value for normalization |
| Reproject 3D | Gives additional output of 2D reprojections of the obtained 3D structure |
| Symmetry | Symmetry of the complex studied (if known) |
| Input | Description |
|---|---|
| Input | Input Description 1 |
| Pre 3D info | Input Description 2 |
| Output | Description |
|---|---|
| 3D | Output Description |
Concept
In this paragraph, the “HOW a logic works under the hood” and WHY someone should use it can be elaborated with higher detail. Describes a scenario in an image processing workflow where this logic can be used to solve the resulting problem. Also, wikipages, publications or anything else describing the theory behind an algorithm should be linked here, if applicable.