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THIS position should be used for a brief introduction (max 2 sentences!) of the logic, stating WHAT and WHY it is doing something.
Here, a general/generic description of HOW the logic is USED should be given. Try to be as general as possible, but also mention prerequisites, restrictions, advantages, requirements which are specific of this logic. Basically everything the user needs to know to successfully use this logic.
Here, a very specific example should be given/described. In the future, this can be supported by screenshots etc.. For the moment, give an example easy enough for the user to understand, but specific enough to elaborate why a given parameter is a good set for this very situation.
This mode is used for de-novo assignment of angles only from the input projections themselves
| Parameters | Description |
| Sinograms | Gives options to read already generated sinograms or to write down sinograms for the images being processed |
| Symmetry | Symmetry of the complex studied (if known) |
| Input | Description |
| In | Image or stack of images (a set of class averages) |
| Output | Description |
| Out | The input projections with assigned Euler angles |
| New/Changed Header Values | Description |
| headerValue1 | what does it say? how is it changed? |
| headerValue2 | what does it say? how is it changed? |
| headerValue3 | what does it say? how is it changed? |
| headerValue4 | what does it say? how is it changed? |
This logic determines the angles of stack of projections if the set with known angular relations is available (e.g. 3D model from already performed angular reconstitution)
| Parameters | Description |
| Symmetry | Symmetry of the complex studied (if known) |
| Input | Description |
| In | Image or stack of images (a set of class averages) |
| Anchor set | Projection set with known angular relations (mostly projected 3D-model) |
| Output | Description |
| Out | The input projections with assigned Euler angles (no anchor dataset in the output) |
| New/Changed Header Values | Description |
| headerValue1 | what does it say? how is it changed? |
| headerValue2 | what does it say? how is it changed? |
| headerValue3 | what does it say? how is it changed? |
| headerValue4 | what does it say? how is it changed? |
This mode is used to adds projections to a set with known/determined Euler angles
| Parameters | Description |
| Symmetry | Symmetry of the complex studied (if known) |
| Input | Description |
| In | Image or stack of images (a set of class averages) |
| Dataset | Stack of images (projections) with assigned Euler angles |
| Output | Description |
| Out | The input dataset with added input projections with assigned Euler angles |
| New/Changed Header Values | Description |
| headerValue1 | what does it say? how is it changed? |
| headerValue2 | what does it say? how is it changed? |
| headerValue3 | what does it say? how is it changed? |
| headerValue4 | what does it say? how is it changed? |
This mode is used to create sinograms from the images. These sinograms can be later used in the same logic to reconstitute the angles.
| Parameters | Description |
| Symmetry | Symmetry of the complex studied (if known) |
| Input | Description |
| In | Image or stack of images |
| Output | Description |
| Out | Sinogram |
| New/Changed Header Values | Description |
| headerValue1 | what does it say? how is it changed? |
| headerValue2 | what does it say? how is it changed? |
| headerValue3 | what does it say? how is it changed? |
| headerValue4 | what does it say? how is it changed? |
In this paragraph, the “HOW a logic works under the hood” and WHY someone should use it can be elaborated with higher detail. Describes a scenario in an image processing workflow where this logic can be used to solve the resulting problem. Also, wikipages, publications or anything else describing the theory behind an algorithm should be linked here, if applicable.