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--- eyes:logics:export [2017/06/12 18:48]
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+++ eyes:logics:export [2017/06/12 19:02] (current)
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 | csv  | The //.csv// format is used to store tabular data into plain text (e.g. Excel). |
 | imagic | The file format was developed based on image science convention. Two files are generated, a header (//.hed//) and an image (//.img//) file. In the header file several image specifications are stored. Two files are generated, a header (//.hed//) and an image (//.img//) file. In the header file an several image specifications are stored |
-| jpg | |
+| jpg | The images are exported as standard jpg-image-files. |
 | mrc  | The mrc format is based on the map format used in the CCP4 suite for macromolecular crystallography.Two options for MRC-Compatibility may be defined: imagic (1) or xmipp3.1 (2), where parameters are stored according to the mentioned software conventions. For using in RELION rename a //.mrc// stack into //.mrcs//. |
-| png | |
+| png | The images are exported as standard png-image-files. |
 | star | The STAR (Self-defining Text Archiving and Retrival) format is an alternative to the XML format to store different kinds of meta data in a easy-to-read fashion. RELION used the star format for all kind of meta data (model.star; optimiser.star; sampling.star and data.star). //Notepad++// can be used to read //.star//-files. |
-| tif | |
+| tif | The images are exported as 32- or 16-bit tif files. |
+|< 100% 30% >|
+^ Parameters                 ^ Description     ^
+| Count                      | Specify, how many images shall be exported, starting from the image defined by parameters Start. |
+| Imagic version             | Define imagic header annotation version. |
+| 3D                         | If checked, the exported data consists of 3Ds. |
+| Start                      | Define, which shall be the first image to be exported. |
+| Coarse factor              | Define applied coarse factor before export. |
+| Cut values to 16bit        | If check, the exported images will be cut to 16 bit before export. |
+| Interpret as RGB           | Pixel values will be interpreted as colored RGB. |
+| Normalize before export    | Images will be normalized before export. |
+| Width                      | Define width of exported images. |
+| Height                     | Define height of exported images. |
+| Depth                      | Define depth (in z-direction) of exported images. |
+| Header size [byte]         | Define header size in byte. |
+| Trailer size [byte]        | Define trailer size in byte. |
+| Endianess                  | Select, whether a big endian or small endian shall be used. |
+| Data type                  | Select data type for exported data. |
+| Append raw header          | Select, whether the raw header should be appended. |
+| Blockname                  | Define Blockname. |
+| Read header only           | Only the file header will be exported. |
+| Convert type               | Select type of conversion. |
+| Header values csv          | Define list of header values to be exported into csv. |
+| File to export to          | Define destination for file export. |
+| Overwrite files            | If at the export destination a file is already existing, decide whether this file shall be overwritten or not. |
+| Split output               | If selected, each image of a stack of images will be exported into an individual file. |