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eyes:logics:import [2017/06/07 15:19] bgraf |
eyes:logics:import [2017/06/12 19:04] (current) jschlie1 |
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| ====== Import ====== | ====== Import ====== | ||
| - | THIS position should be used for a brief introduction (max 2 sentences!) of the logic, stating WHAT and WHY it is doing something. | + | The import logic can be used to import any datasets of interest into the Cow. Files of the formats //.cio, .csv, .dat, .fraw, .hed, .img, .mrc, .pdb .raw and .star.// are supported. |
| ===== Usage ===== | ===== Usage ===== | ||
| By selecting the full path to the file and more needed parameters, this logic will load the data and provide an IO that contains the chosen input images. | By selecting the full path to the file and more needed parameters, this logic will load the data and provide an IO that contains the chosen input images. | ||
| - | ===== Example ==== | ||
| - | Here, a very specific example should be given/described. In the future, this can be supported by screenshots etc.. For the moment, give an example easy enough for the user to understand, but specific enough to elaborate why a given parameter is a good set for this very situation. | ||
| ===== FileTypes ===== | ===== FileTypes ===== | ||
| - | Possible file types to be imported are: .cio, .csv, .dat, .fraw, .hed, .img, .mrc, .pdb .raw and .star. The “autodetect” option can be activated to automatically chose a defined file format. | + | Possible file types to be imported are: //.cio, .csv, .dat, .fraw, .hed, .img, .mrc, .pdb .raw and .star.// The “autodetect” option can be used to automatically chose a defined file format. |
| - | Specific information about format usage is given in: http://10.208.31.31/doku.php?id=coweyes:logics:966bb531-8821-47a7-8db1-b2f8bd6864e2 (.cio, .csv, .dat, .hed, .img, .mrc and .star). | + | === .raw and .fraw files === |
| + | Micrographs in the .raw/.fraw format can be imported into the Cow | ||
| - | |< 100% 30% >| | + | === STAR Files === |
| - | ^ FileTypes ^ Description ^ | + | |
| - | | raw and fraw | Micrographs in the .raw/.fraw format can be imported into the cow | | + | |
| - | | filename | See http://10.208.31.34/mediawiki/index.php/EM_File_Formats for further information. | | + | |
| - | ==== STAR Files ==== | + | |
| <code> | <code> | ||
| # "star label" "cow label" "value type" "description" | # "star label" "cow label" "value type" "description" | ||
| Line 33: | Line 28: | ||
| </code> | </code> | ||
| - | |||
| - | ===== Concept ===== | ||
| - | Adding external data is the start to image processing in the cow. Therefore, a central logic to handle all kinds of different input formats is needed that can import 2D and 3D structures, image stacks, pictures and anything else that is needed. This is the job of the import logic | ||