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eyes:logics:extractbymember [2017/06/09 18:56] nfische |
eyes:logics:extractbymember [2017/06/12 19:33] (current) kbertra2 [Process] |
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| ====== ExtractByMembers ====== | ====== ExtractByMembers ====== | ||
| - | Use this logic to extract particles images based on their membership to classes as selected beforehand with the interactive logic [[:eyes:interactives:gui::extract]]. | + | Use this logic to extract particles images based on their membership to classes as selected beforehand with the interactive logic [[eyes:interactive:extract|]]. |
| ===== Usage ===== | ===== Usage ===== | ||
| - | After [[:eyes:interactives:gui::classification]] one often wants not only to define certain class averages for further processing, but also the corresponding particles images. For this purpose, class averages have to be first selected with the interactive logic [[:eyes:interactives:gui::extract]]. This logic then allows to extract the corresponding particles. | + | After [[:eyes:logics:Classification]] one often wants not only to define certain class averages for further processing, but also the corresponding particles images. For this purpose, class averages have to be first selected with the interactive logic [[eyes:interactive:extract|]]. This logic then allows to extract or exclude the corresponding particles from the total data. Alternatively, with the key "referenceData" this logic may be used to select particles according to their assignment to a certain reference from [[:eyes:logics:Alignment]]. |
| ===== Example ==== | ===== Example ==== | ||
| - | ===== Modes/Processes ===== | + | ===== Process ===== |
| - | ==== thisIsTheNameOfMode1 ==== | + | |
| - | Here, a short introduction for the given mode should be placed. Again, state WHAT and WHY this mode us useful in not more than 2 sentences. | + | |
| |< 100% 30% >| | |< 100% 30% >| | ||
| ^ Parameters ^ Description ^ | ^ Parameters ^ Description ^ | ||
| - | | Work on key - //clusterMember// | Use this key to extract particles images according to their class membersip | | + | | Work on key - //clusterMember// | Use this key to extract particles images according to their class membership. | |
| - | | Extract mode - //Keep selected// | All particles belonging to the chosen classes will be kept | | + | | Work on key - //referenceData// | Use this key to extract particles images according to their assignment to a certain reference. | |
| - | | Extract mode - //Discard selected// | All particles belonging to the chosen classes will be discarded, and only particles belonging to the not chosen classes will be kept. | | + | | Extract mode - //Keep selected// | All particles belonging to the chosen classes/references will be kept. | |
| + | | Extract mode - //Discard selected// | All particles belonging to the chosen classes/references will be discarded, and only particles belonging to the not chosen classes/references will be kept. | | ||
| - | |< 100% 30% >| | ||
| - | ^ Input ^ Description ^ | ||
| - | | Pre extract io | "io::out" from the interactive logic [[:eyes:interactives:gui::extract]] | | ||
| - | | In | Input Description 2 | | ||
| - | | //ThirdInput// | Input Description 3: Optional Input in Italic | | ||
| - | |||
| - | |< 100% 30% >| | ||
| - | ^ Output ^ Description ^ | ||
| - | | FirstOutput | Output Description | | ||
| - | |||
| - | |< 100% 30% >| | ||
| - | ^ New/Changed Header Values ^ Description ^ | ||
| - | | headerValue1 | what does it say? how is it changed? | | ||
| - | | headerValue2 | what does it say? how is it changed? | | ||
| - | | headerValue3 | what does it say? how is it changed? | | ||
| - | | headerValue4 | what does it say? how is it changed? | | ||
| - | |||
| - | ==== thisIsTheNameOfMode2 ==== | ||
| - | Here, a short introduction for the given mode should be placed. Again, state WHAT and WHY this mode us useful in not more than 2 sentences. | ||
| - | |||
| - | |< 100% 30% >| | ||
| - | ^ Parameters ^ Description ^ | ||
| - | | Some changeable parameter | Description of this parameter | | ||
| - | | -> and its sub-parameter | more description | | ||
| - | | Next main parameter | and more more more | | ||
| - | | -> and its sub-parameter | ... descriptions | | ||
| |< 100% 30% >| | |< 100% 30% >| | ||
| ^ Input ^ Description ^ | ^ Input ^ Description ^ | ||
| - | | FirstInput | Input Description 1 | | + | | Pre extract io | Information about the chosen class averages/references, i.e. "io::out" from the interactive logic [[eyes:interactive:extract|]]. | |
| - | | SecondImput | Input Description 2 | | + | | In | Particle images with assigned class membership ("clusterMember") or reference ("referenceData").| |
| - | | ThridImput | Input Description 1 | | + | |
| |< 100% 30% >| | |< 100% 30% >| | ||
| ^ Output ^ Description ^ | ^ Output ^ Description ^ | ||
| - | | FirstOutput | Output Description | | + | | FirstOutput | Extracted particle images. | |
| - | + | ||
| - | |< 100% 30% >| | + | |
| - | ^ New/Changed Header Values ^ Description ^ | + | |
| - | | headerValue1 | what does it say? how is it changed? | | + | |
| - | | headerValue2 | what does it say? how is it changed? | | + | |
| - | | headerValue3 | what does it say? how is it changed? | | + | |
| - | | headerValue4 | what does it say? how is it changed? | | + | |
| - | + | ||
| - | ===== Concept ===== | + | |
| - | In this paragraph, the "HOW a logic works under the hood" and WHY someone should use it can be elaborated with higher detail. Describes a scenario in an image processing workflow where this logic can be used to solve the resulting problem. Also, wikipages, publications or anything else describing the theory behind an algorithm should be linked here, if applicable. | + | |