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--- eyes:logics:adjustpixelvalueoutlier [2017/06/12 17:03]
gbunzel created
+++ eyes:logics:adjustpixelvalueoutlier [2017/06/12 18:32] (current)
jschlie1
@@ Line 5: / Line 5: @@
 This module can be used to remove hot pixels as determined by the set criteria. The hot pixels are then replaced by pixels within the normal range with specified type.
-===== Example ====
+===== Parameters and I/O =====
-Here, a very specific example should be given/described. In the future, this can be supported by screenshots etc.. For the moment, give an example easy enough for the user to understand, but specific enough to elaborate why a given parameter is a good set for this very situation.
-===== Modes/Processes =====
-==== thisIsTheNameOfMode1 ====
-Here, a short introduction for the given mode should be placed. Again, state WHAT and WHY this mode us useful in not more than 2 sentences.
-|< 100% 30% >|
-^ Parameters                 ^ Description     ^
-| Some changeable parameter  | Description of this parameter |
-| -> and its sub-parameter   | more description |
-| Next main parameter        | and more more more |
-| -> and its sub-parameter   | ... descriptions |
-|< 100% 30% >|
-^ Input   ^ Description ^
-| FirstInput  | Input Description 1 |
-| SecondInput | Input Description 2 |
-| //ThirdInput//  | Input Description 3: Optional Input in Italic |
-|< 100% 30% >|
-^ Output   ^ Description ^
-| FirstOutput | Output Description |
-|< 100% 30% >|
-^ New/Changed Header Values ^ Description ^
-| headerValue1 | what does it say? how is it changed? |
-| headerValue2 | what does it say? how is it changed? |
-| headerValue3 | what does it say? how is it changed? |
-| headerValue4 | what does it say? how is it changed? |
-==== thisIsTheNameOfMode2 ====
-Here, a short introduction for the given mode should be placed. Again, state WHAT and WHY this mode us useful in not more than 2 sentences.
 |< 100% 30% >|
 ^ Parameters                 ^ Description     ^
-| Some changeable parameter  | Description of this parameter |
+| Adjust outliers  | Choose which kind of outliers to deal with |
-| -> and its sub-parameter   | more description |
+| -> Both   | Deal with outliers that are below and above specified multiples of the standard deviation. |
-| Next main parameter        | and more more more |
+| -> Above   | Deal with outliers that are above specified multiples of the standard deviation. |
-| -> and its sub-parameter   | ... descriptions |
+| -> Below   | Deal with outliers that are below specified multiples of the standard deviation. |
+| Adjustment type       | Choose how to treat outliers |
+| -> Neighbour average   | Replace outliers with the average of the surrounding pixels |
+| -> Custom value   | Replace outliers with the to the mean value of the complete image |
+| -> Image mean   | Replace outliers with a specified custom value |
+| Deviations from mean [in sdevs]       | Choose the multiples of standard deviations from mean that are considered to be an outlier. |
 |< 100% 30% >|
 ^ Input   ^ Description ^
-| FirstInput  | Input Description 1 |
+| Input | Input images with hot pixels |
-| SecondImput | Input Description 2 |
-| ThridImput  | Input Description 1 |
 |< 100% 30% >|
 ^ Output   ^ Description ^
-| FirstOutput | Output Description |
+| Output | Output images with modified hot pixels |
 |< 100% 30% >|
 ^ New/Changed Header Values ^ Description ^
-| headerValue1 | what does it say? how is it changed? |
+| |No header values are being added or changed. |
-| headerValue2 | what does it say? how is it changed? |
-| headerValue3 | what does it say? how is it changed? |
-| headerValue4 | what does it say? how is it changed? |
 ===== Concept =====
 A discussion of different CCD characteristics including hot pixels can be found [[http://scripts.iucr.org/cgi-bin/paper?S0907444909031205|here]].