====== Execute parameters ======
Applies the Alignment Parameters (shift and rotation) that have been applied to one stack on a stack of the same size. This is useful, when the alignment was run on a somewhat modified version (high dose, downsampled images etc.) of the original stack.   
 
===== Usage =====
Needed is a stack of particles mostly without applied alignment and a stack of particles containing the alignment parameters. The shift and rotation parameters of the second stack are than unchanged or scaled transferred on the first stack.  


===== Parameter and I/Os =====
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^ Parameters                 ^ Description     ^
| With ccc | FIXME |
| Revert | Apply the invert of the alignment parameters given. This is useful when an alignment should be reverted  |
| Apply rotations | Whether or not to apply the rotational parameter |
| Apply shifts | Whether or not to apply shift parameter |
|Scale factor (shifts) | If the images are scaled differently the shiftparameter can be scaled by this value|

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^ Input   ^ Description ^
| Input  | Stack of images on which the images on which the parameter should be applied |
| Input Parameter | Stack of images containing the alignment parameter |


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^ Output   ^ Description ^
| Output | Input images with applied parameter |

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^ New/Changed Header Values ^ Description ^
| appliedAlphaAngle  | which inplane rotation has been applied to this image |
| appliedXshift | which X shift has been applied to this image |
| appliedXshift | which X shift has been applied to this image |