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| - | In this web guide, you may find all the information necessary to use the CryoEM software package **CowSuite**. | + | In this web guide, you may find all the information necessary to use the cryoEM software package **CowSuite**. |
| - | This package consists of the application [[eyes]], [[picker]] and [[mqc]]. It can be used to facilitate **the entire cryoEM image-processing workflow** from directly after image acquisition, including micrograph quality sorting, particle picking and extraction, 2D-classification, angular reconstitution, and 3D reconstruction, all the way to automated 3D refinement to name only some of the many features. | + | This package consists of the application [[eyes]], [[picker]] and [[mqc]]. It can be used to facilitate **the entire cryoEM image-processing workflow** from directly after image acquisition, including micrograph quality sorting, particle picking and extraction, 2D-classification, angular reconstitution, and 3D reconstruction, all the way to automated 3D refinement, to name only some of the many features. |
| + | For help and recommendations when setting up the cow for the first time, please consult the [[:installationinstructions]]. | ||
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| If you are a **first time user** of CowSuite, we highly recommend our comprehensive [[:tutorial]], which provides a sample dataset and a step-by-step instruction for most of the major steps of CowSuite's image processing workflow. Additionally, a look at our [[faq]] should answer many of you questions right away. | If you are a **first time user** of CowSuite, we highly recommend our comprehensive [[:tutorial]], which provides a sample dataset and a step-by-step instruction for most of the major steps of CowSuite's image processing workflow. Additionally, a look at our [[faq]] should answer many of you questions right away. | ||
| - | For more **experienced users**, we provide a detailed glossary with in-detail descriptions of all functionalities, sorted by CowSuite application. As one example, the specifics of a CowEyes logic can be found in the [[eyes:logics | list of CowEyes logics]]. | + | For more **experienced users**, we provide a glossary with detailed descriptions of all functionalities, sorted by CowSuite application. As one example, the specifics of a CowEyes logic can be found in the [[eyes:logics | list of CowEyes logics]]. |
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| **Useful articles:** | **Useful articles:** | ||
| + | * [[:installationInstructions|Installation Instructions]] | ||
| * [[:tutorial|Tutorial for first time users]] | * [[:tutorial|Tutorial for first time users]] | ||
| + | * [[:tutorial_energy_landscape| Advanced tutorial on Energy landscape determination]] | ||
| * [[:eyes:logics|List of CowEyes logics]] | * [[:eyes:logics|List of CowEyes logics]] | ||
| * [[:faq|FAQ]] | * [[:faq|FAQ]] | ||
| - | * [[:template_article]] | ||
| ~~NOTOC~~ | ~~NOTOC~~ | ||